FastQCFastQC Report
Wed 8 Feb 2023
EGAF00001680958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001680958
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences195236815
Sequences flagged as poor quality0
Sequence length90
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6317610.32358702430174346No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3113790.15948785069045507No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)