FastQCFastQC Report
Sun 4 Sep 2022
EGAF00001682388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001682388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3638454
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATTCTCGGGTGCCAAGTCGACGTACGATCAATAGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGG675661.8569975049842598TruSeq Adapter, Index 1 (96% over 27bp)
TGGAATTCTCGGGTGCCAAGTCGACGTACGATCAATAGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG183880.5053794826044248RNA PCR Primer, Index 40 (96% over 27bp)
CGACTTGGAATTCTCGGGTGCCAAGTCGACGTACGATCAATAGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAA43480.11950130467500758RNA PCR Primer, Index 40 (96% over 27bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)