FastQCFastQC Report
Wed 8 May 2024
EGAF00001682409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001682409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3702077
Total Bases277.6 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATTCTCGGGTGCCAAGTCGACGTACGATCCGTACGATCTCGTATGCC553511.495133677662566Illumina RNA RT Primer (95% over 21bp)
TGGAATTCTCGGGTGCCAAGTCGACGTACGATCCGTACGATCTCGTATGC142870.38591849926406174Illumina RNA RT Primer (95% over 22bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)