FastQCFastQC Report
Wed 8 May 2024
EGAF00001682484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001682484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3989360
Total Bases299.2 Mbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATTCTCGGGTGCCAAGTCGACGTACGATCAAAGCAATCTCGTATGCC1149772.882091363025648Illumina RNA RT Primer (95% over 21bp)
TGGAATTCTCGGGTGCCAAGTCGACGTACGATCAAAGCAATCTCGTATGC327210.8202067499548801Illumina RNA RT Primer (95% over 22bp)
TTCCCTACACGACTTGGAATTCTCGGGTGCCAAGTCGACGTACGATCAAA87830.2201606272685343Illumina RNA RT Primer (95% over 22bp)
CGACTTGGAATTCTCGGGTGCCAAGTCGACGTACGATCAAAGCAATCTCG81820.2050955541741031Illumina RNA RT Primer (95% over 22bp)
CGGGTGCCAAGTCGACGTACGATCAAAGCAATCTCGTATGCCGTCTTCTG52950.1327280566306375TruSeq Adapter, Index 4 (95% over 24bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)