FastQCFastQC Report
Thu 9 May 2024
EGAF00001682498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001682498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41886778
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG8369431.9981078515993758Illumina Single End PCR Primer 1 (100% over 50bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA430080.10267679218487515No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)