FastQCFastQC Report
Wed 14 Sep 2022
EGAF00001682508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001682508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25263860
Sequences flagged as poor quality0
Sequence length75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAAAA658000.26045109496331914Illumina Single End PCR Primer 1 (100% over 57bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN563100.22288755558335108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)