FastQCFastQC Report
Fri 10 Feb 2023
EGAF00001685243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001685243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences148283953
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2195170.14803827087075294No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1934530.13046118348355604No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1549730.10451097159515299No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)