FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001685254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001685254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83923097
Sequences flagged as poor quality0
Sequence length100-106
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4542110.5412228769393485No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1135700.13532627376704173No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA993230.11835001751663192No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG844280.10060162579557806No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)