FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001685288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001685288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110250786
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC2436180.2209671321526905No Hit
GCAGAACTCAGAGCTGCTCTTCCTCTGTGGCCAGTTGGGGACCAGCATCA2337130.21198306921820947No Hit
GGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGACGGAACCTGG1621580.14708103759006308No Hit
GGAAGATCTGGCCTCTGTCCTGTGCCCACTTTAGATGTATCTAATTCTCC1522110.13805887968907543No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1453630.13184758610247005No Hit
CCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGG1315380.11930799296070325No Hit
GGGCAAACAACCAGGTCGGCCTGGCCCCCGTGGCTTAAGCCTAAGTCTCT1309860.11880731625804462No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1301800.11807625571032211No Hit
GTTACCGTCGAGGGTTACTGGCAGATCACCGTGGACAGCATCACCATGAA1296740.11761730206621837No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC1234290.11195294335588682No Hit
GTTACAGCCCCCCCGGCAGCAGCACTCGCCGAATCCCGGGGCCGAGGGAG1215820.11027767185260702No Hit
GTCCTTGAGGCGCACCCTGTCCGAGCGTGGCCTGCTGAAGGACTTCCTGA1195100.10839832017161312No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1168750.10600831453482791No Hit
CATGTACAAGGTCCCCCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGT1118550.10145505901427315No Hit
GTACAAGGTCCCCCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGTCCG1109480.10063238914233229No Hit
CTTGCCTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGC1105890.10030676788100178No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)