FastQCFastQC Report
Thu 23 Feb 2023
EGAF00001685308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001685308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109407729
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGA2497310.22825718281749546No Hit
CCTCAGTCTACTGCTCCAGTCTTGCCTGCACCAACCACAACCGCTTCAAC2397830.21916458936827032No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG2346350.21445925451939507No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA2057560.18806349595283164No Hit
CGACACTGTCCAGGTTGGAGGCATCTCTGACACCAATCAGATCTTCGGCC1837570.16795614138010306No Hit
CATGTACAAGGTCCCCCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGT1756880.1605809768704732No Hit
CTTTACCGTCTTCGACAGGGCAAACAACCAGGTCGGCCTGGCCCCCGTGG1723090.15749252961826857No Hit
CTGGCCTCTGTCCTGTGCCCACTTTAGATGTATCTAATTCTCCTGACTGT1694190.15485103433597458No Hit
CCTGGGGCTGGCCTACCCCAGCATTTCCTCCTCCGGGGCCACACCCGTCT1627550.14876005697915545No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG1613800.1475032901925969No Hit
CCCGTCTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTCTT1609990.14715505154119413No Hit
CCAGAGTGGCAGCGTGGTGATCTTTGGTGGCATTGACTCTTCTTACTACA1552700.14191867559923485No Hit
GGCATCTCTGACACCAATCAGATCTTCGGCCTGAGCGAGACGGAACCTGG1549710.1416453859489214No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1537130.14049555859074636No Hit
CTCAGATGGCGACATGGTGGTCAGCTGCTCAGCCATCAGCAGCCTGCCCG1533220.1401381798172595No Hit
CACCCGTCTTTGACAACATCTGGAACCAGGGCCTGGTTTCTCAGGACCTC1492720.1364364303732143No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT1459170.1333699194140114No Hit
CATCAATATGGTGACCTCCCGGGAGCGGGGGACCACCAGGTTGCCTAAGG1411170.12898266081366153No Hit
ATCAGATCTTCGGCCTGAGCGAGACGGAACCTGGCTCCTTCCTGTATTAT1407080.12860882982042338No Hit
CTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCG1374200.1256035576791837No Hit
CTTCTCCCTCGAGTTGGGACCCGGGAAGAACCATGAAGTGGCTGCTGCTG1363480.12462373659177224No Hit
GTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGT1342690.12272350521049567No Hit
CAACCACAACCGCTTCAACCCTGAGGATTCTTCCACCTACCAGTCCACCA1335030.12202337185885652No Hit
CCTGGATATGGAGTACTTCGGCACTATCGGCATCGGAACTCCTGCCCAGG1310090.11974382541109138No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC1305290.11930509955105639No Hit
CCTCATCAGAAAGAAGTCCTTGAGGCGCACCCTGTCCGAGCGTGGCCTGC1282840.11725314214318441No Hit
CAGCGAGACAGTCTCCATCACCTACGGCACCGGCAGCATGACAGGCATCC1277680.11678151184364681No Hit
CTTCGGCCTGAGCGAGACGGAACCTGGCTCCTTCCTGTATTATGCTCCCT1277650.11677876980702158No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAAC1270750.11614810138322129No Hit
GGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTT1267440.11584556334223882No Hit
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG1251220.11436303554020393No Hit
GGGCAAACAACCAGGTCGGCCTGGCCCCCGTGGCTTAAGCCTAAGTCTCT1244090.11371134483561028No Hit
CCCAGTGCCTACATCCTGCAGAGCGAGGGGAGCTGCATCAGTGGCTTCCA1230040.11242715768279954No Hit
GGAAGATCTGGCCTCTGTCCTGTGCCCACTTTAGATGTATCTAATTCTCC1219990.11150857541335128No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1212090.11078650576871035No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1201270.10979754455921482No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT1190320.10879670119101001No Hit
CCCTGTCCGAGCGTGGCCTGCTGAAGGACTTCCTGAAGAAGCACAACCTC1174230.10732605554768439No Hit
GTCCTTGAGGCGCACCCTGTCCGAGCGTGGCCTGCTGAAGGACTTCCTGA1166230.1065948457809594No Hit
CTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCT1163070.10630601792310304No Hit
GTCTTCATCCGCCAGTACTTTACCGTCTTCGACAGGGCAAACAACCAGGT1152090.105302432518273No Hit
CGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCG1128220.10312068537680734No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT1117490.10213995027718746No Hit
GTTACCGTCGAGGGTTACTGGCAGATCACCGTGGACAGCATCACCATGAA1104730.10097367069926112No Hit
CTGGAAGTCTGAACTGGGTGCCTGTTACCGTCGAGGGTTACTGGCAGATC1098330.10038870288588111No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)