FastQCFastQC Report
Thu 5 Jan 2023
EGAF00001685438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001685438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43788177
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATATTCCACGTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTC568590.1298501191314724No Hit
CCATGATTTTCAGTTTTCTTGCCATATTCCACGTCCTACAGTGGACATTT502130.1146725062338174No Hit
CGTCATTTTTCAAGTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTC477070.10894950022696766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)