FastQCFastQC Report
Sun 8 Jan 2023
EGAF00001697993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001697993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences788383685
Sequences flagged as poor quality0
Sequence length50
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAATGAAGCGAACCGGGTGAACTGAAACATCTCAGTAGCTCGAGGAA35907890.4554621142369277No Hit
ACATAGGGTAATGAAGCGAACCGGGTGAACTGAAACATCTCAGTAGCTCG17221770.21844401815595665No Hit
GAATACATAGGGTAATGAAGCGAACCGGGTGAACTGAAACATCTCAGTAG14465670.18348515164922521No Hit
GTAATGAAGCGAACCGGGTGAACTGAAACATCTCAGTAGCTCGAGGAAAA14129880.17922593108963183No Hit
GACTAAGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGACGAAGGACG10259170.1301291515184006No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10232850.12979530391981664No Hit
TTTTAGCAGTTTGCATATCAGAACGGAATGGAAAGTCCGGCCACAGCGGG9738960.12353071461644974No Hit
TCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGC8793890.11154327730665813No Hit
CCCATGTCCCGCCGTGAAGTGGAGGACCCACAAGTGGCACAACTGGAGCT8729050.11072083512230468No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA8716240.11055835078575985No Hit
TCATTATCTGAATACATAGGGTAATGAAGCGAACCGGGTGAACTGAAACA8694700.1102851335641224No Hit
GGTCATCATTATCTGAATACATAGGGTAATGAAGCGAACCGGGTGAACTG8640280.10959486052784058No Hit
GTGCATGTGGTGGATGCCTTGGCGATTACAGGCGACGAAGGACGTGATAG8493420.1077320619591462No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT8109290.10285968817327822No Hit
TCCTCTGGGAGTCCCACCCCACCCAGGCTTTTGTCAAGCAGCACCTTTGT8085530.10255831207364469No Hit
TCCCTACACGACGCGGGGGGTCAAGTGACTAAGTGCATGTGGTGGATGCC7988920.10133289351364494No Hit
GGGAAATGAAGCGAACCGGGTGAACTGAAACATCTCAGTAGCTCGAGGAA7906480.10028720977400744No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)