FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001698195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001698195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9402012
Sequences flagged as poor quality0
Sequence length126
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCA3770444.010248019253751RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCC3042423.2359243957569936RNA PCR Primer, Index 1 (100% over 27bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCA2634792.802368259049233RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCA1871371.9903931201108869RNA PCR Primer, Index 1 (100% over 28bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGTATGC1804471.9192381375390712RNA PCR Primer, Index 12 (100% over 50bp)
TATTGCACTCGTCCCGGCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCA1574501.6746415554457919RNA PCR Primer, Index 1 (100% over 28bp)
TGAGGTAGTAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA1448031.5401277939232583RNA PCR Primer, Index 1 (100% over 28bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT1388431.4767371069086064RNA PCR Primer, Index 1 (100% over 30bp)
CATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGTAT1316631.4003704738943112RNA PCR Primer, Index 12 (100% over 48bp)
CGCGACCTCAGATCAGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC948081.008379908470655RNA PCR Primer, Index 1 (100% over 33bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT817590.8695904663810258RNA PCR Primer, Index 1 (97% over 35bp)
TCACAGTGAACCGGTCTCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAG731750.7782908594458292RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGATTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA708760.7538386464514191RNA PCR Primer, Index 1 (100% over 28bp)
GACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT650700.6920859067186895RNA PCR Primer, Index 1 (97% over 35bp)
TGAGATGAAGCACTGTAGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT611540.6504352472640963RNA PCR Primer, Index 1 (100% over 30bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTTGGAATTCTCGGGTGCC608870.6475954295740103No Hit
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG581820.6188249919272598RNA PCR Primer, Index 1 (100% over 29bp)
AACATTCAACGCTGTCGGTGATGGAATTCTCGGGTGCCAAGGAACTCCAG513660.5463298706702353RNA PCR Primer, Index 1 (100% over 29bp)
GGGGATTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC508040.5403524266933503RNA PCR Primer, Index 12 (100% over 44bp)
TCGGATCCGTCTGAGCTTGGCTTGGAATTCTCGGGTGCCAAGGAACTCCA504920.5370339880442612RNA PCR Primer, Index 1 (100% over 28bp)
TCTTTGGTTATCTAGCTGTATGATGGAATTCTCGGGTGCCAAGGAACTCC503200.5352045923787376RNA PCR Primer, Index 1 (100% over 27bp)
CCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC493800.5252067323462254RNA PCR Primer, Index 1 (100% over 33bp)
TCGAGGAGCTCACAGTCTAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG415970.44242657848128675RNA PCR Primer, Index 1 (100% over 29bp)
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTT400810.42630237017353306RNA PCR Primer, Index 12 (100% over 36bp)
CGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC400390.4258556572784634RNA PCR Primer, Index 2 (100% over 34bp)
TGAGGTAGTAGGTTGTATGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA376470.4004142943021132RNA PCR Primer, Index 1 (100% over 28bp)
GTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC375770.3996697728103304RNA PCR Primer, Index 12 (100% over 44bp)
GGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCG348250.37039944216195425RNA PCR Primer, Index 12 (100% over 45bp)
CGCGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCT343770.3656345046145442RNA PCR Primer, Index 12 (100% over 43bp)
CATTATTACTTTTGGTACGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG322180.34267133460369975RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGGTTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG319940.3402888658299947RNA PCR Primer, Index 1 (100% over 29bp)
GGGGGATTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCT306470.325962145123831RNA PCR Primer, Index 12 (100% over 43bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCC304080.32342013603045816RNA PCR Primer, Index 1 (100% over 27bp)
CCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGTA296540.315400575961826RNA PCR Primer, Index 12 (100% over 47bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCA283510.30154184019335434No Hit
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC277630.29528785966237864RNA PCR Primer, Index 1 (100% over 26bp)
TGAGGTAGTAGTTTGTACAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA266230.28316279536762984RNA PCR Primer, Index 1 (100% over 28bp)
GACACAAGGGTTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTT261860.27851485405464277RNA PCR Primer, Index 12 (100% over 36bp)
TCACAGTGAACCGGTCTCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGT254050.2702081214106087RNA PCR Primer, Index 1 (100% over 30bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCA242160.2575618920716119RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG237360.25245660184224394RNA PCR Primer, Index 1 (100% over 29bp)
TCTTTGGTTATCTAGCTGTATTGGAATTCTCGGGTGCCAAGGAACTCCAG233010.2478299325718793RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGGTTGTGTGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA230110.24474548639163615RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA229720.24433068156050003RNA PCR Primer, Index 1 (100% over 28bp)
TGAGACCTCTGGGTTCTGAGCTTGGAATTCTCGGGTGCCAAGGAACTCCA226970.24140577569992466RNA PCR Primer, Index 1 (100% over 28bp)
GTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC225370.23970401229013535RNA PCR Primer, Index 2 (100% over 34bp)
TGAGATGAAGCACTGTAGCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG222440.2365876580459587RNA PCR Primer, Index 1 (100% over 29bp)
GAAGGATCATTATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGT219630.2335989360575162RNA PCR Primer, Index 12 (100% over 38bp)
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC214950.22862127808388247RNA PCR Primer, Index 1 (100% over 26bp)
GTCGCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCT214780.22844046572159235RNA PCR Primer, Index 12 (100% over 43bp)
TGTAAACATCCTCGACTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGT213120.22667488618393594RNA PCR Primer, Index 1 (100% over 30bp)
TCCAGCATCAGTGATTTTGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG207720.22093143467589704RNA PCR Primer, Index 1 (100% over 29bp)
TGAGATGAAGCACTGTAGCTCTTGGAATTCTCGGGTGCCAAGGAACTCCA205810.21889995460546105RNA PCR Primer, Index 1 (100% over 28bp)
TATCGGGCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTA196830.20934880746801854RNA PCR Primer, Index 12 (100% over 39bp)
TGAGGTAGTAGATTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG196410.20890209457294887RNA PCR Primer, Index 1 (100% over 29bp)
TTCAAGTAATCCAGGATAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAG186890.19877660228470248RNA PCR Primer, Index 1 (100% over 29bp)
TAAGGCACGCGGTGAATGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGT184140.19585169642412711RNA PCR Primer, Index 1 (100% over 30bp)
CACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTG169250.18001466069177532RNA PCR Primer, Index 12 (100% over 37bp)
TCTTTGGTTATCTAGCTGTATGTGGAATTCTCGGGTGCCAAGGAACTCCA169000.17974876015899574RNA PCR Primer, Index 1 (100% over 28bp)
CTAATGGATAAGGCACTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA166850.17746201557709138RNA PCR Primer, Index 1 (100% over 32bp)
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC164620.17509018282469752RNA PCR Primer, Index 1 (100% over 26bp)
TCCCTGGTCTAGTGGTTAGGATTCGGCGCTTGGAATTCTCGGGTGCCAAG164440.17489873444109622No Hit
TTCAAGTAATTCAGGATAGGTTTGGAATTCTCGGGTGCCAAGGAACTCCA163330.1737181360755549RNA PCR Primer, Index 1 (100% over 28bp)
CACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC162010.17231418126247872RNA PCR Primer, Index 2 (100% over 34bp)
CACCCGTAGAACCGACCTTGCGTGGAATTCTCGGGTGCCAAGGAACTCCA161860.17215464094281097RNA PCR Primer, Index 1 (100% over 28bp)
TCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA161550.17182492428216428RNA PCR Primer, Index 1 (100% over 32bp)
CACCCGTAGAACCGACCTTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG153250.16299702659388224RNA PCR Primer, Index 1 (100% over 29bp)
CAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTA152730.16244395348570073RNA PCR Primer, Index 12 (100% over 39bp)
CGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC151960.1616249798447396RNA PCR Primer, Index 1 (100% over 31bp)
CGCGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATC150860.16045501750050944RNA PCR Primer, Index 12 (100% over 42bp)
GCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGT150120.1596679519234819RNA PCR Primer, Index 12 (100% over 46bp)
TATTGCACTCGTCCCGGCCTCATGGAATTCTCGGGTGCCAAGGAACTCCA147120.15647714553012695RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTACACTCTCAGCTTGGAATTCTCGGGTGCCAAGGAACTC146070.15536036329245273RNA PCR Primer, Index 1 (100% over 26bp)
TATTGCACTCGTCCCGGCCTCCATGGAATTCTCGGGTGCCAAGGAACTCC145160.15439248535313504RNA PCR Primer, Index 1 (100% over 27bp)
TGAGGTAGTAAGTTGTATTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA145090.15431803320395676RNA PCR Primer, Index 1 (100% over 28bp)
TCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATC144440.15362669181872987RNA PCR Primer, Index 12 (100% over 42bp)
AACCCGTAGATCCGAACTTGTGTGGAATTCTCGGGTGCCAAGGAACTCCA144260.15343524343512857RNA PCR Primer, Index 1 (100% over 28bp)
TTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCG141910.15093577842700054RNA PCR Primer, Index 12 (100% over 45bp)
TCCCTGAGACCCTTTAACCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA140800.1497551800614592RNA PCR Primer, Index 1 (100% over 28bp)
TCCCTGAGACCCTAACTTGTGATGGAATTCTCGGGTGCCAAGGAACTCCA139090.14793642041724686RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGAGATGGAATTCTCGGGTGCCAAGGAACTCC136800.14550077153698593RNA PCR Primer, Index 1 (100% over 27bp)
CGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC136580.14526677906813987RNA PCR Primer, Index 12 (100% over 44bp)
CTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC136510.1451923269189616RNA PCR Primer, Index 2 (100% over 34bp)
ACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT135770.14440526134193404RNA PCR Primer, Index 1 (97% over 35bp)
TTATAAAGCAATGAGACTGATTTGGAATTCTCGGGTGCCAAGGAACTCCA131890.140278485073195RNA PCR Primer, Index 1 (100% over 28bp)
GGGGGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC131790.14017212486008315RNA PCR Primer, Index 12 (100% over 44bp)
TCGAGGAGCTCACAGTCTAGTATGGAATTCTCGGGTGCCAAGGAACTCCA131410.13976795605025819RNA PCR Primer, Index 1 (100% over 28bp)
TGAGGTAGTAGTTTGTGCTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA129800.1380555566191577RNA PCR Primer, Index 1 (100% over 28bp)
CGGGGGAGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAAT128060.1362048889110118RNA PCR Primer, Index 12 (100% over 41bp)
TTCAAGTAATCCAGGATAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCC125310.13327998305043645RNA PCR Primer, Index 1 (100% over 27bp)
AACATTCAACCTGTCGGTGAGTTTGGAATTCTCGGGTGCCAAGGAACTCC124870.13281199811274438RNA PCR Primer, Index 1 (100% over 27bp)
AACATTCAACCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCCA123480.13133359115048993RNA PCR Primer, Index 1 (100% over 28bp)
AATATAACACAGATGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG123340.13118468685213336RNA PCR Primer, Index 1 (100% over 29bp)
GGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC120770.12845122937515926RNA PCR Primer, Index 12 (100% over 44bp)
AACATTCATTGCTGTCGGTGGGTTGGAATTCTCGGGTGCCAAGGAACTCC118500.1260368525375207RNA PCR Primer, Index 1 (100% over 27bp)
GCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCT117610.1250902466408254RNA PCR Primer, Index 12 (100% over 43bp)
AACATTCAACGCTGTCGGTGAGTTTGGAATTCTCGGGTGCCAAGGAACTC116840.12427127299986429RNA PCR Primer, Index 1 (100% over 26bp)
CGGTGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAAT116790.12421809289330837RNA PCR Primer, Index 12 (100% over 41bp)
TAGCACCATCTGAAATCGGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG115430.12277159399498745RNA PCR Primer, Index 1 (100% over 29bp)
TCACAGTGAACCGGTCTCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC112060.11918725481311872RNA PCR Primer, Index 1 (100% over 31bp)
AGCAGCATTGTACAGGGCTATGATGGAATTCTCGGGTGCCAAGGAACTCC111660.11876181396067138RNA PCR Primer, Index 1 (100% over 27bp)
AGGATGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAA111460.11854909353444774RNA PCR Primer, Index 12 (100% over 40bp)
GCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCG111140.11820874085248986RNA PCR Primer, Index 12 (100% over 45bp)
TTCACAGTGGCTAAGTTCTGCTTGGAATTCTCGGGTGCCAAGGAACTCCA109840.11682605808203606RNA PCR Primer, Index 1 (100% over 28bp)
TCGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC108390.11528383499191448RNA PCR Primer, Index 1 (100% over 33bp)
GTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTT108120.11499666241651255RNA PCR Primer, Index 12 (100% over 36bp)
TGAGGTAGGAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA106780.113571435560814RNA PCR Primer, Index 1 (100% over 28bp)
AACCCGTAGATCCGAACTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG106000.11274182589854172RNA PCR Primer, Index 1 (100% over 29bp)
GGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTCGT103410.10998709637894527RNA PCR Primer, Index 12 (100% over 46bp)
GGCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCTTGTAATCTC101940.10842360124620136RNA PCR Primer, Index 12 (100% over 44bp)
GTACAGTACTGTGATAACTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC101880.10835978511833425RNA PCR Primer, Index 1 (100% over 31bp)
GAGCGGTCGGCGTCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACCT99410.105732687854472RNA PCR Primer, Index 1 (97% over 35bp)
TACAGTACTGTGATAACTGACTTGGAATTCTCGGGTGCCAAGGAACTCCA97760.10397774433812676RNA PCR Primer, Index 1 (100% over 28bp)
TGTCTGAGCGTCGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACC96480.10261633361029533RNA PCR Primer, Index 2 (100% over 34bp)
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAA96430.10256315350373942No Hit
AACATTCAACGCTGTCGGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT96320.10244615726931638RNA PCR Primer, Index 1 (100% over 30bp)
TCACAGTGAACCGGTCTCTTTCTGGAATTCTCGGGTGCCAAGGAACTCCA95580.10165909169228884RNA PCR Primer, Index 1 (100% over 28bp)

[FAIL]Adapter Content

Adapter graph