FastQCFastQC Report
Tue 7 May 2024
EGAF00001703419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001703419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4
Total Bases4.7 kbp
Sequences flagged as poor quality0
Sequence length1166-1194
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGCCACGTTACGGGGTGGCGGTGTCGGGGCTGGCTTACTATGCGGCAT125.0No Hit
GGGCCCACGAAACGGGTGGCGGGTGTCGGGGCTGGCTTAACTATGCGGCA125.0No Hit
CGGCCACGATGCGGTTGGCGGTGTCGGGGCTGGCTTAACTATGCGGCATC125.0No Hit
CGCCTACGGATACGGGTGGCGGTGTCGGGGCTGGCTTAACTATGCGGCAT125.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)