FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001703425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001703425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40859084
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1291280.31603253758699046No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1043010.25527003982761826No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT695860.17030729323251592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)