FastQCFastQC Report
Fri 6 Jan 2023
EGAF00001707070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155364776
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCA7466930.4806063634398057No Hit
CCAGGACTTCGATGTTGTGCTCTCCCAGTCTCACCTGGATGCGGGACTTG2849160.1833851966548711No Hit
CTGTAACCTTTTTTCCAGACAGTGTGACAGATACCTTATACCTCCAACGT2735100.17604376425709262No Hit
CTCCAACGTGCAAAATTACTGGCATCACCAGTGTCTAGATAAAATTTCTG2727410.1755488000703583No Hit
GGGGGCTTTAGCTATTGGCAGCTATGGTGTTCTTAATCCATTTCACATAG2607490.16783019080206443No Hit
CAGGCATTTCCACTCCTCCATTTGGAAAGAAATCTAGGTGGCCCACGACT2315630.14904472298148197No Hit
GTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCAT2206640.1420296193778183No Hit
CTGACATGAATCCTTGCCTCCCTCAAGGAAGCCCACACAGAACATGTTGC2141170.13781566550194108No Hit
CTCGTCTGGGTAGTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGA2024750.13032233252149766No Hit
CTCCAGGACTTCGATGTTGTGCTCTCCCAGTCTCACCTGGATGCGGGACT1891120.12172128385136667No Hit
GTCGTATTGGGGGTGGCGGATGATCTTGGCTGCATTGATGAACTGCTCAT1811540.11659914471218366No Hit
CTCCGAGCAGGGGTTACTGCTGGCTCCGGACAACCCAAAGCCAGCGTCCC1733990.11160766581995395No Hit
GTCACTTTATTGGTATAGAGACTGAAGAGATACTGGGGGCTTTAGCTATT1678970.10806632257494453No Hit
CCTTGGTGTAGACTCCAGGCTTGTTCTTCTGGGCACAGCCATCACCCCAG1652650.10637224489030898No Hit
CCAGAATTCAGGGACACCTGGTAGGGGACAGAATTCTCCTCACAGTTGTA1611780.1037416614947522No Hit
ATCAGCTTTCTCAACTAGTACAGGTGTTCCAGGACGTAGCTGGCAACATA1589780.10232563911397781No Hit
GTCGGCGCCAGAGCTCGCAGTGTTGCCCCAGCCAGAGATGAGGCACTTCG1587450.10217566947092306No Hit
CTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCACATTG1583710.1019349456661914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)