FastQCFastQC Report
Mon 23 Jan 2023
EGAF00001707071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155364776
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGAATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCC7880210.5072069875091894No Hit
GGAAACTCTAAGCAGTATGAAATTTTCAAGGGCACTCTCAAACCAGATAG2398180.1543580251420695No Hit
CTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGTG2215020.142568995175586No Hit
CCTGAATTCTGGCTACCACTTCTGTGGTGGCTCCCTCATCAACGAACAGT2115500.13616342484219202No Hit
ATCCACTCCTGATCCTTACCTTTGTGGCAGCTGCTCTTGCTGCCCCCTTT1726810.11114552760659212No Hit
CATGAATCTACTTCTGATCCTTACCTTTGTTGCAGCTGCTGTTGCTGCCC1720200.11072007724582308No Hit
CTCATTCCAATGAATTTGACTCAGATGTGGATGTTGGGGACTTGCAGATG1594730.10264424414965204No Hit
CAAGGATTCATGTCAGGGTGATTCTGGTGGCCCTGTGGTCTGCAATGGAC1594120.10260498171091238No Hit
CGGAACTGCCACGATGCTGCCACTTTGGACTCTTTCACTGCTGCTGGGAG1572280.10119925767472546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)