FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001707243

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707243
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6204145
Sequences flagged as poor quality0
Sequence length35-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC941951.5182591638332115No Hit
TCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC313650.5055491127302796No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC250610.40393962423508795No Hit
GCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC163150.26296935355314877No Hit
AGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC156900.2528954432883177No Hit
CCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC123330.19878645647385737No Hit
TGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC115240.18574678702706013No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC111980.18049223543292428No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC102820.16572791254878794No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC99280.16002204977478765No Hit
CGTGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC93820.15122148176743128No Hit
GAGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC72740.11724419722620924No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCA71230.11481034050622607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)