FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001707244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7840390
Sequences flagged as poor quality0
Sequence length35-51
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC125610.1602088671609448No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC108310.13814363826289253No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC88380.11272398439363349No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)