FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001707249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6772556
Sequences flagged as poor quality0
Sequence length35-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC1261281.862339713396242No Hit
TCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC391140.5775367527415056No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC331590.48960835465959973No Hit
AGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC203390.30031497709284355No Hit
GCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC200910.29665313952368944No Hit
TGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC157480.2325266856412852No Hit
CCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC153400.22650237222106395No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC152580.22529160334739204No Hit
CGTGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC124120.18326906414653493No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC118350.174749385608624No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC104940.15494888488186734No Hit
GAGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC85510.12625956876547054No Hit
TAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCA78680.11617474997622759No Hit
CGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGC71230.10517447179469613No Hit
GGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC68310.10086295336649855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)