FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001707254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4545485
Sequences flagged as poor quality0
Sequence length35-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC407000.8953940008601943No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC285820.6287997870414268No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC222090.488594726415333No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC88930.1956446891805825No Hit
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTA82490.1814767841055465No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC78750.17324883923277712No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG57970.12753314552792497No Hit
GGTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC53580.11787521023609142No Hit
TTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGCAGAC47310.10408130265527221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)