FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001707662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23633068
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGCACTACAGAACTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG15907446.731009279032245RNA PCR Primer, Index 1 (100% over 29bp)
TTTGTTCGTTCGGCTCGCGTGATGGAATTCTCGGGTGCCAAGGAACTCCAG9094103.8480403813842536RNA PCR Primer, Index 1 (100% over 29bp)
TCAGTGCACTACAGAACTTTGTCTGGAATTCTCGGGTGCCAAGGAACTCCA4570971.934141601928281RNA PCR Primer, Index 1 (100% over 28bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC4406011.8643411003598855RNA PCR Primer, Index 1 (100% over 31bp)
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG4220901.7860144099784252RNA PCR Primer, Index 1 (100% over 29bp)
CTGACCTATGAATTGACAGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGT3328111.4082428908510736RNA PCR Primer, Index 1 (100% over 30bp)
TAACACTGTCTGGTAAAGATGTGGAATTCTCGGGTGCCAAGGAACTCCAGT2887801.2219319133681672RNA PCR Primer, Index 1 (100% over 30bp)
CCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA2704431.144341479489671RNA PCR Primer, Index 1 (100% over 34bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC2646071.1196472671258764RNA PCR Primer, Index 1 (100% over 36bp)
TTTGTTCGTTCGGCTCGCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAG2630361.1129998018031344RNA PCR Primer, Index 1 (100% over 29bp)
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT2255980.954586175607839RNA PCR Primer, Index 1 (100% over 30bp)
TGTAAACATCCTCGACTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC2125520.8993838633223583RNA PCR Primer, Index 1 (100% over 31bp)
GTCTACGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGAT1833330.7757477784940999RNA PCR Primer, Index 1 (100% over 41bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG1731290.7325709890903711RNA PCR Primer, Index 1 (100% over 29bp)
TCGGATCCGTCTGAGCTTGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG1674750.7086468841032405RNA PCR Primer, Index 1 (100% over 29bp)
GTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA1405180.5945821338135193RNA PCR Primer, Index 1 (100% over 37bp)
TAGCTTATCAGACTGATGTTGACTGGAATTCTCGGGTGCCAAGGAACTCCA1381440.5845368870431888RNA PCR Primer, Index 1 (100% over 28bp)
TCAGTGCACTACAGAACTTTGATGGAATTCTCGGGTGCCAAGGAACTCCAG1207820.5110720283968209RNA PCR Primer, Index 1 (100% over 29bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCAG1202880.508981736945876RNA PCR Primer, Index 1 (100% over 29bp)
TGAGGTAGTAGGTTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG986730.41752090756900456RNA PCR Primer, Index 1 (100% over 29bp)
CGCGACCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTC957580.40518649546474456RNA PCR Primer, Index 1 (100% over 44bp)
GACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC914400.3869154863854325RNA PCR Primer, Index 1 (100% over 36bp)
TTTGTTCGTTCGGCTCGCGTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT881670.37306624768311925RNA PCR Primer, Index 1 (100% over 30bp)
TCAGTGCACTACAGAACTTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT857240.3627290371271305RNA PCR Primer, Index 1 (100% over 30bp)
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAA835610.3535766071506247No Hit
CGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT804730.34051016990261274RNA PCR Primer, Index 1 (100% over 35bp)
CGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA763560.3230896640250009RNA PCR Primer, Index 1 (100% over 32bp)
TCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC742890.31434344453288926RNA PCR Primer, Index 1 (100% over 33bp)
TGTAAACATCCTCGACTGGAATGGAATTCTCGGGTGCCAAGGAACTCCAGT694850.29401599487633173RNA PCR Primer, Index 1 (100% over 30bp)
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC673040.284787400434002RNA PCR Primer, Index 1 (100% over 27bp)
CTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT671080.283958054028364RNA PCR Primer, Index 1 (100% over 35bp)
TGGCTGAGGAGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCAC626090.26492116893160045RNA PCR Primer, Index 1 (100% over 38bp)
TCGGATCCGTCTGAGCTTGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT588420.24898163877834228RNA PCR Primer, Index 1 (100% over 30bp)
TTTGTTCGTTCGGCTCGCGTGAATGGAATTCTCGGGTGCCAAGGAACTCCA577700.24444562170260753RNA PCR Primer, Index 1 (100% over 28bp)
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA564270.2387629062803018RNA PCR Primer, Index 1 (100% over 37bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTCGTATGCC547960.23186155940481362RNA PCR Primer, Index 1 (100% over 51bp)
GGTCCTGAGAGATGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA543400.22993205960394142RNA PCR Primer, Index 1 (100% over 34bp)
TGAGGTAGTAGATTGTATAGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG523500.22151165477118756RNA PCR Primer, Index 1 (100% over 29bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCCA500580.2118133794562771RNA PCR Primer, Index 1 (100% over 28bp)
CAGGTCTGTGATGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT496020.2098838796554049RNA PCR Primer, Index 1 (100% over 35bp)
ACGAGAACTTTGAAGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC476160.20148040025950079RNA PCR Primer, Index 1 (100% over 33bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG466630.19744791493004635RNA PCR Primer, Index 1 (100% over 29bp)
TTTGTTCGTTCGGCTCGCGTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG465530.196982465416678RNA PCR Primer, Index 1 (100% over 29bp)
GGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC464530.19655932949543412RNA PCR Primer, Index 1 (100% over 36bp)
TGTAAACATCCTACACTCAGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG463200.19599655872017968RNA PCR Primer, Index 1 (100% over 29bp)
AACGAGAACTTTGAAGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA457780.1937031620270377RNA PCR Primer, Index 1 (100% over 32bp)
TTTGTTCGTTCGGCTCGCGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC450260.1905211798992835RNA PCR Primer, Index 1 (100% over 31bp)
CACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT446800.18905712961177956RNA PCR Primer, Index 1 (100% over 35bp)
TGAGGTAGTAGGTTGTGTGGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG441850.18696260680162222RNA PCR Primer, Index 1 (100% over 29bp)
CAACACCAGTCGATGGGCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGT441100.18664525486068928RNA PCR Primer, Index 1 (100% over 30bp)
GTCCGGCCGTGTCGGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC434210.1837298483633187RNA PCR Primer, Index 1 (100% over 33bp)
TTTGGCAATGGTAGAACTCACATGGAATTCTCGGGTGCCAAGGAACTCCAG429960.18193152069803212RNA PCR Primer, Index 1 (100% over 29bp)
GTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT427250.1807848223514611RNA PCR Primer, Index 1 (100% over 35bp)
TCGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA422770.17888917342428837RNA PCR Primer, Index 1 (100% over 34bp)
GACACAAGGGTTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA417840.17680311333255588RNA PCR Primer, Index 1 (100% over 37bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAG413550.1749878602304195RNA PCR Primer, Index 1 (100% over 29bp)
TGACCTATGAATTGACAGCCAGTTGGAATTCTCGGGTGCCAAGGAACTCCA406860.17215708091729776RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTCGACTGGAAGTGGAATTCTCGGGTGCCAAGGAACTCCAG405610.17162816101574285RNA PCR Primer, Index 1 (100% over 29bp)
TAGCTTATCAGACTGATGTTGACTTGGAATTCTCGGGTGCCAAGGAACTCC404900.17132773451165967RNA PCR Primer, Index 1 (100% over 27bp)
CAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGA391630.16571272083675298RNA PCR Primer, Index 1 (100% over 40bp)
CGCGACCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCT389610.16485798627584028RNA PCR Primer, Index 1 (100% over 43bp)
TCAGTGCACTACAGAACTTTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA383880.16243341744711265RNA PCR Primer, Index 1 (100% over 28bp)
TTTGGCAATGGTAGAACTCACACTTGGAATTCTCGGGTGCCAAGGAACTCC379260.1604785294909658RNA PCR Primer, Index 1 (100% over 27bp)
TCCGGCCGTGTCGGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA373840.15818513279782379RNA PCR Primer, Index 1 (100% over 34bp)
TCAGTGCACTACAGAACTTTGTCTTGGAATTCTCGGGTGCCAAGGAACTCC362110.15322174844163272RNA PCR Primer, Index 1 (100% over 27bp)
GCATTGTGGTTCAGTGGTAGAATTCTCGCCTTGGAATTCTCGGGTGCCAAG360950.15273091077298978No Hit
TGTAAACATCCCCGACTGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC357770.15138533854343414RNA PCR Primer, Index 1 (100% over 31bp)
TTCAAGTAATTCAGGATAGGTTTGGAATTCTCGGGTGCCAAGGAACTCCAG355030.15022594611922582RNA PCR Primer, Index 1 (100% over 29bp)
CGCGACCTCAGATCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA351570.1487618958317219RNA PCR Primer, Index 1 (100% over 37bp)
TACAGTACTGTGATAACTGACTTGGAATTCTCGGGTGCCAAGGAACTCCAG345200.14606652001339818RNA PCR Primer, Index 1 (100% over 29bp)
GGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT335290.14187324303387103RNA PCR Primer, Index 1 (100% over 35bp)
TAGCTTATCAGACTGATGTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT333910.14128931546255444RNA PCR Primer, Index 1 (100% over 30bp)
TGAGGTAGTAGGTTGTATAGTTGGAATTCTCGGGTGCCAAGGAACTCCAGT323320.1368083060565814RNA PCR Primer, Index 1 (100% over 30bp)
TTTGTTCGTTCGGCTCGCGTGATTGGAATTCTCGGGTGCCAAGGAACTCCA320020.1354119575164765RNA PCR Primer, Index 1 (100% over 28bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTGGAATTCTCGGGTGC319360.1351326878084555No Hit
TGGCTGAGGAGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACG317790.13446836441210258RNA PCR Primer, Index 1 (100% over 39bp)
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC314900.13324550159970766RNA PCR Primer, Index 1 (100% over 27bp)
TCAAACGAGAACTTTGAATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC313880.13281390296003887RNA PCR Primer, Index 1 (100% over 33bp)
ACGGTGTGAGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA312250.1321241914084113RNA PCR Primer, Index 1 (100% over 37bp)
TTCAAGTAATCCAGGATAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT309780.13107904568293885RNA PCR Primer, Index 1 (100% over 30bp)
TTCCCTTTGTCATCCTATGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAG306310.1296107640362225RNA PCR Primer, Index 1 (100% over 29bp)
TGAGATGAAGCACTGTAGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC299560.12675459656782606RNA PCR Primer, Index 1 (100% over 31bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCCA294000.12440196084570992RNA PCR Primer, Index 1 (100% over 28bp)
TAATACTGCCGGGTAATGATGGATGGAATTCTCGGGTGCCAAGGAACTCCA288670.12214664638547988RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTCGACTGGAAGATGGAATTCTCGGGTGCCAAGGAACTCCA282250.11943011377109397RNA PCR Primer, Index 1 (100% over 28bp)
AAAGTTCTGAGACACTCCGACTTGGAATTCTCGGGTGCCAAGGAACTCCAG281020.11890965658796396RNA PCR Primer, Index 1 (100% over 29bp)
GTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTCG277980.11762332338738246RNA PCR Primer, Index 1 (100% over 45bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG267660.1132565606801453RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC265030.1121437132072738RNA PCR Primer, Index 1 (100% over 27bp)
TCGGATCCGTCTGAGCTTGGCATGGAATTCTCGGGTGCCAAGGAACTCCAG263160.11135244903454769RNA PCR Primer, Index 1 (100% over 29bp)
TCAAACGAGAACTTTGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA257250.10885171573999618RNA PCR Primer, Index 1 (100% over 34bp)
TGTAAACATCCTCGACTGGAAGCTGGAATTCTCGGGTGCCAAGGAACTCCA252750.10694760409439857RNA PCR Primer, Index 1 (100% over 28bp)
TTCACAGTGGCTAAGTTCTGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG250350.10593207788341319RNA PCR Primer, Index 1 (100% over 29bp)
CTACGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG250180.10586014477680172RNA PCR Primer, Index 1 (100% over 29bp)
TACGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT248840.10529314264233489RNA PCR Primer, Index 1 (100% over 30bp)
TACCTGGTTGATCCTGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC248650.10521274681729853RNA PCR Primer, Index 1 (100% over 33bp)
TTCACAGTGGCTAAGTTCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA248640.1052085154580861RNA PCR Primer, Index 1 (100% over 32bp)
CGCGACCTCAGATCAGACGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC244640.10351597177311045RNA PCR Primer, Index 1 (100% over 31bp)
CTGACCTATGAATTGACAGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC241380.1021365486698553RNA PCR Primer, Index 1 (100% over 31bp)
CGACTCTTAGCGGTGGATCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA238100.10074866284817527RNA PCR Primer, Index 1 (100% over 32bp)
TTCTGATCGAGGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC237580.10052863216912845RNA PCR Primer, Index 1 (100% over 36bp)
CTGACCTATGAATTGACAGCCATGGAATTCTCGGGTGCCAAGGAACTCCAG237300.10041015411118015RNA PCR Primer, Index 1 (100% over 29bp)

[FAIL]Adapter Content

Adapter graph