FastQCFastQC Report
Fri 17 Mar 2023
EGAF00001707672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145287354
Sequences flagged as poor quality0
Sequence length51
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAGAACTTTGAAGAGAGAGTTTGGAATTCTCGGGTGCCAAGGAACTCCA16435191.1312195829514522RNA PCR Primer, Index 1 (100% over 28bp)
CTTCTGATCGAGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTG13875070.9550087889961848RNA PCR Primer, Index 15 (97% over 36bp)
CCAAGCGTTGGATTGTTCACCTGGAATTCTCGGGTGCCAAGGAACTCCAGT13675760.9412904580807494RNA PCR Primer, Index 1 (100% over 30bp)
CCAAGCGTTGGATTGTTCACCCTGGAATTCTCGGGTGCCAAGGAACTCCAG13029090.8967807342681732RNA PCR Primer, Index 1 (100% over 29bp)
CGGCGACTCTGGACGCGAGCCGGGTGGAATTCTCGGGTGCCAAGGAACTCC12238580.8423706305505433RNA PCR Primer, Index 1 (100% over 27bp)
ACACTTCGAACGCACTTGCGGCCCCGTGGAATTCTCGGGTGCCAAGGAACT11482390.7903227420605375RNA PCR Primer, Index 1 (100% over 25bp)
AGAAGACCCTGTTGAGCTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC11047900.7604171798737556RNA PCR Primer, Index 1 (100% over 31bp)
ATCAGATACCGTCGTAGTTCCGTGGAATTCTCGGGTGCCAAGGAACTCCAG10583610.7284605100592582RNA PCR Primer, Index 1 (100% over 29bp)
CCAAGCGTTGGATTGTTCACCCACTAATAGGGTGGAATTCTCGGGTGCCAA9478440.6523926370081734No Hit
ATTCGAACGTCTGCCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG9231040.6353643139512335RNA PCR Primer, Index 6 (100% over 34bp)
ATCAGATACCGTCGTAGTTCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC8039860.5533764487169338RNA PCR Primer, Index 1 (100% over 31bp)
GAAAAGAACTTTGAAGAGAGAGTTTGGAATTCTCGGGTGCCAAGGAACTCC7711970.5308080701917113RNA PCR Primer, Index 1 (100% over 27bp)
GGCCGTGATCGTATAGTGGTTAGTACTCTGTGGAATTCTCGGGTGCCAAGG7494060.5158095177368294Illumina Small RNA Adapter 2 (100% over 21bp)
CCATTCGAACGTCTGCCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA7004570.48211835422372684RNA PCR Primer, Index 1 (100% over 32bp)
CACTTCGAACGCACTTGCGGCCCCGTGGAATTCTCGGGTGCCAAGGAACTC6366890.4382274041552164RNA PCR Primer, Index 1 (100% over 26bp)
CATTCGAACGTCTGCCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC6324810.4353310749950061RNA PCR Primer, Index 1 (100% over 33bp)
CGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTG6322660.43518309239770453RNA PCR Primer, Index 15 (97% over 36bp)
AAGAAGACCCTGTTGAGCTTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT6159170.4239302203824291RNA PCR Primer, Index 1 (100% over 30bp)
AATTGCAGGACACATTGATCATCGTGGAATTCTCGGGTGCCAAGGAACTCC6064090.4173859481259463RNA PCR Primer, Index 1 (100% over 27bp)
ACGAGAACTTTGAAGGCCGAAGTGGTGGAATTCTCGGGTGCCAAGGAACTC5672710.3904476090878494RNA PCR Primer, Index 1 (100% over 26bp)
CTAAACCATTCGTAGACGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTC5520780.3799904016422517RNA PCR Primer, Index 1 (100% over 31bp)
CCAAGCGTTGGATTGTTCACCCATGGAATTCTCGGGTGCCAAGGAACTCCA5404760.3720048477171661RNA PCR Primer, Index 1 (100% over 28bp)
AATTAAAACAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGAA5375310.369977830279709RNA PCR Primer, Index 1 (100% over 23bp)
AATTGCAGGACACATTGATCATCTGGAATTCTCGGGTGCCAAGGAACTCCA5264250.3623336687651425RNA PCR Primer, Index 1 (100% over 28bp)
TCAGATACCGTCGTAGTTCCGACTGGAATTCTCGGGTGCCAAGGAACTCCA5247110.36115393773363097RNA PCR Primer, Index 1 (100% over 28bp)
AATTGCAGGACACATTGATCATCGATGGAATTCTCGGGTGCCAAGGAACTC5139320.353734847425193RNA PCR Primer, Index 1 (100% over 26bp)
TCAGATACCGTCGTAGTTCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT5124900.3527423315865468RNA PCR Primer, Index 1 (100% over 30bp)
CATGAATGGATGAACGAGATTTGGAATTCTCGGGTGCCAAGGAACTCCAGT5111380.35181176195142216RNA PCR Primer, Index 1 (100% over 30bp)
ACGAGAACTTTGAAGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA4722090.32501727576372547RNA PCR Primer, Index 1 (100% over 32bp)
CCCATAACCCAGAGGTCGATGTGGAATTCTCGGGTGCCAAGGAACTCCAGT4534410.3120994274560193RNA PCR Primer, Index 1 (100% over 30bp)
CGTAACTTCGGGATAAGGATTGGCTTGGAATTCTCGGGTGCCAAGGAACTC4500510.30976612045670543RNA PCR Primer, Index 1 (100% over 26bp)
ACACTTCGAACGCACTTGCGGCCCCGGTGGAATTCTCGGGTGCCAAGGAAC4467200.3074734226352556RNA PCR Primer, Index 1 (100% over 24bp)
AAAAGAACTTTGAAGAGAGAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG4387020.3019547041926306RNA PCR Primer, Index 1 (100% over 29bp)
CGCGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG4350250.29942385763319773RNA PCR Primer, Index 6 (100% over 34bp)
ACAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT4316380.2970926155073345RNA PCR Primer, Index 1 (100% over 30bp)
GCGGCGACTCTGGACGCGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGAAC4210810.28982632583424983RNA PCR Primer, Index 1 (100% over 24bp)
GCGGCGACTCTGGACGCGAGCCGGGTGGAATTCTCGGGTGCCAAGGAACTC4157420.286151539383118RNA PCR Primer, Index 1 (100% over 26bp)
TCAGATACCGTCGTAGTTCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA4012360.27616718795773515RNA PCR Primer, Index 1 (100% over 32bp)
CGTTCGCGCTTTCCCCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC3874410.266672211540173RNA PCR Primer, Index 1 (100% over 33bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGTGGAATTCTCGGGTGCCAA3672450.252771483469924No Hit
ATCAGATACCGTCGTAGTTCCGACTGGAATTCTCGGGTGCCAAGGAACTCC3639850.2505276543201413RNA PCR Primer, Index 1 (100% over 27bp)
TGAATTGCAGGACACATTGATCATCTGGAATTCTCGGGTGCCAAGGAACTC3299020.22706862704650813RNA PCR Primer, Index 1 (100% over 26bp)
AAACGAGAACTTTGAAGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT3200890.22031442598920203RNA PCR Primer, Index 1 (100% over 30bp)
AAAAGAACTTTGAAGAGAGAGTTCTGGAATTCTCGGGTGCCAAGGAACTCC3169090.21812566013143853RNA PCR Primer, Index 1 (100% over 27bp)
CCCAAGTCCTTCTGATCGAGGCCTGGAATTCTCGGGTGCCAAGGAACTCCA3142990.21632922022931192RNA PCR Primer, Index 1 (100% over 28bp)
CAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC3110370.2140840144972287RNA PCR Primer, Index 1 (100% over 31bp)
AACGAGAACTTTGAAGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC3061960.2107519970389164RNA PCR Primer, Index 1 (100% over 31bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGCC3013630.20742548590980603No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGTGGAATTCTCGGGTGCCAAGGA2969430.20438323902574482RNA PCR Primer, Index 1 (100% over 22bp)
TAATTAAAACAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGA2959580.2037052722427583RNA PCR Primer, Index 1 (100% over 22bp)
CGTAACTTCGGGATAAGGATTGGCTCTATGGAATTCTCGGGTGCCAAGGAA2900850.19966293831739823RNA PCR Primer, Index 1 (100% over 23bp)
CGAGAACTTTGAAGGCCGAAGTGGAGATGGAATTCTCGGGTGCCAAGGAAC2875940.19794840506215014RNA PCR Primer, Index 1 (100% over 24bp)
CGGCGACTCTGGACGCGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGAACT2717330.187031419128192RNA PCR Primer, Index 1 (100% over 25bp)
CAAGCGTTGGATTGTTCACCCTGGAATTCTCGGGTGCCAAGGAACTCCAGT2714590.18684282735302618RNA PCR Primer, Index 1 (100% over 30bp)
TGAATTGCAGGACACATTGATCATCGTGGAATTCTCGGGTGCCAAGGAACT2708210.186403697599173RNA PCR Primer, Index 1 (100% over 25bp)
CTTCTGATCGAGGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT2652480.18256785101888495RNA PCR Primer, Index 1 (97% over 35bp)
ACGAGAACTTTGAAGGCCGAAGTGGAGATGGAATTCTCGGGTGCCAAGGAA2612450.17981262154447386RNA PCR Primer, Index 1 (100% over 23bp)
AACAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAG2529910.17413146639039212RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG2511080.17283541415449RNA PCR Primer, Index 1 (100% over 29bp)
CCTTGGAAAGCGTCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT2446590.16839662452659163RNA PCR Primer, Index 1 (97% over 35bp)
CCCCACGTCTCGTCGCGCGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT2416190.16630421942986173RNA PCR Primer, Index 1 (100% over 30bp)
CGAGAACTTTGAAGGCCGAAGTGGTGGAATTCTCGGGTGCCAAGGAACTCC2396470.16494690928158826RNA PCR Primer, Index 1 (100% over 27bp)
ACTTCGAACGCACTTGCGGCCCCGTGGAATTCTCGGGTGCCAAGGAACTCC2364490.16274575418312043RNA PCR Primer, Index 1 (100% over 27bp)
CTTTTTGATCCTTCGATGTCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC2341550.16116681428446966RNA PCR Primer, Index 1 (100% over 31bp)
CCCAAGTCCTTCTGATCGAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAG2320380.15970970191941136RNA PCR Primer, Index 1 (100% over 29bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGC2313610.15924372881069881No Hit
CACTTCGAACGCACTTGCGGCCCCGGTGGAATTCTCGGGTGCCAAGGAACT2304770.15863527943388658RNA PCR Primer, Index 1 (100% over 25bp)
GCCGGTACAGTGAAACTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC2302780.1584983094949888RNA PCR Primer, Index 1 (100% over 33bp)
CGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCAAGGAACT2290230.15763450410143748RNA PCR Primer, Index 1 (100% over 25bp)
CTCGGATCGGCCCCGCCGGGGTCTGGAATTCTCGGGTGCCAAGGAACTCCA2280870.15699026358481277RNA PCR Primer, Index 1 (100% over 28bp)
GAAAAGAACTTTGAAGAGAGAGTTCTGGAATTCTCGGGTGCCAAGGAACTC2263400.15578781894534333RNA PCR Primer, Index 1 (100% over 26bp)
CCCTTCCCGTGGATCGCCCCAGTGGAATTCTCGGGTGCCAAGGAACTCCAG2263200.15577405312233852RNA PCR Primer, Index 1 (100% over 29bp)
ACCCATTCGAACGTCTGCCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT2245750.15457298506516953RNA PCR Primer, Index 1 (100% over 30bp)
AAACCATTCGTAGACGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC2229450.15345107049027817RNA PCR Primer, Index 1 (100% over 33bp)
GTGTAATGGTTAGCACTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC2186800.15051550873450417RNA PCR Primer, Index 1 (100% over 31bp)
GAGTTCTGGGCTGTAGTGCGCTATGGAATTCTCGGGTGCCAAGGAACTCCA2184150.15033311157969056RNA PCR Primer, Index 1 (100% over 28bp)
CGAAGCTACCATCTGTGGGATTTGGAATTCTCGGGTGCCAAGGAACTCCAG2176490.14980588055860664RNA PCR Primer, Index 1 (100% over 29bp)
GCCGGTACAGTGAAACTGCGAATGGTGGAATTCTCGGGTGCCAAGGAACTC2175530.1497398046081836RNA PCR Primer, Index 1 (100% over 26bp)
CGAGAACTTTGAAGGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC2148770.1478979374901411RNA PCR Primer, Index 1 (100% over 33bp)
CGACACAAGGGTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT2146630.14775064318398973RNA PCR Primer, Index 1 (97% over 35bp)
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTGGAATTCTCGGGTGCCAA2102740.14472973332558592No Hit
AAACAAAGCATCGCGAAGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCA2096870.144325706420395RNA PCR Primer, Index 1 (100% over 28bp)
AAACCATTCGTAGACGACCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT2061700.14190498644500057RNA PCR Primer, Index 1 (100% over 30bp)
ACAGCAGTTGAACATGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT2051910.14123114940891554RNA PCR Primer, Index 1 (97% over 35bp)
CATGAATGGATGAACGAGATTCTGGAATTCTCGGGTGCCAAGGAACTCCAG2038830.14033086458440147RNA PCR Primer, Index 1 (100% over 29bp)
AACGAGAACTTTGAAGGCCGAAGTGGTGGAATTCTCGGGTGCCAAGGAACT2006640.1381152553717786RNA PCR Primer, Index 1 (100% over 25bp)
CCAAGCGTTGGATTGTTCACCCACTAATAGGTGGAATTCTCGGGTGCCAAG1965370.13527467779473773No Hit
CCAGGGGAATCCGACTGTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA1962830.13509985184257675RNA PCR Primer, Index 1 (100% over 32bp)
ATTCGAACGTCTGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGT1948670.13412523157383677RNA PCR Primer, Index 1 (97% over 35bp)
CGCGCCGGCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTGG1912090.1316074625462585RNA PCR Primer, Index 17 (97% over 37bp)
GAAAAGAACTTTGAAGAGAGAGTTGGAATTCTCGGGTGCCAAGGAACTCCA1899200.130720255253599RNA PCR Primer, Index 1 (100% over 28bp)
TTTGACTGGGGCGGTACACCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT1831410.12605432954612142RNA PCR Primer, Index 1 (100% over 30bp)
ACGAGAACTTTGAAGGCCGAAGTGGAATTCTCGGGTGCCAAGGAACTCCAG1793110.12341817444070184RNA PCR Primer, Index 1 (100% over 29bp)
ACACTTCGAACGCACTTGCGGCCCCGGGTGGAATTCTCGGGTGCCAAGGAA1708440.11759041327161895RNA PCR Primer, Index 1 (100% over 23bp)
GAGTTCTGGGCTGTAGTGCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG1688830.11624067432599813RNA PCR Primer, Index 1 (100% over 29bp)
ATGGCCTCCGTTGCCCTCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT1672000.11508228032014403RNA PCR Primer, Index 1 (100% over 30bp)
ATCTATTGAAAGTCAGCCCTCGACTGGAATTCTCGGGTGCCAAGGAACTCC1668520.11484275499986049RNA PCR Primer, Index 1 (100% over 27bp)
TAACTGGCTTGTGGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG1652390.11373254137452321RNA PCR Primer, Index 6 (100% over 34bp)
AATTGCAGGACACATTGATCATCGACTGGAATTCTCGGGTGCCAAGGAACT1643310.1131075730101052RNA PCR Primer, Index 1 (100% over 25bp)
CGCGACCTCAGATCAGACGTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC1635400.11256313471026529RNA PCR Primer, Index 1 (100% over 31bp)
ATACATGCCGACGGGCGCTGACCCTGGAATTCTCGGGTGCCAAGGAACTCC1631120.11226854609796254RNA PCR Primer, Index 1 (100% over 27bp)
ACGAGAACTTTGAAGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTG1626680.11196294482725593RNA PCR Primer, Index 15 (97% over 36bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGATGGAATTCTCGGGTGCCA1624730.1118287280529591No Hit
ACGAGAACTTTGAAGGCCGAAGTGGAGTGGAATTCTCGGGTGCCAAGGAAC1622120.11164908406274644RNA PCR Primer, Index 1 (100% over 24bp)
AAAAGAACTTTGAAGAGAGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA1609590.1107866552514956RNA PCR Primer, Index 1 (100% over 32bp)
CATTGTGAAGCAGAATTCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA1600940.1101912834065379RNA PCR Primer, Index 1 (100% over 32bp)
ACGAGAACTTTGAAGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG1594660.10975903656418715RNA PCR Primer, Index 6 (100% over 34bp)
AACAGCAGTTGAACATGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACG1576860.10853387831675976RNA PCR Primer, Index 6 (100% over 34bp)
CCATTCGAACGTCTGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC1561750.10749387038874697RNA PCR Primer, Index 1 (100% over 33bp)
CCCACGTCTCGTCGCGCGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC1539040.10593076118655173RNA PCR Primer, Index 1 (100% over 31bp)
CGAGAACTTTGAAGGCCGAAGTGGAATTCTCGGGTGCCAAGGAACTCCAGT1524340.10491897319569878RNA PCR Primer, Index 1 (100% over 30bp)
GACACTTCGAACGCACTTGCGGCCCCGTGGAATTCTCGGGTGCCAAGGAAC1510940.10399666305437705RNA PCR Primer, Index 1 (100% over 24bp)
CGCGACCTCAGATCAGACGTGGCGACCCGTGGAATTCTCGGGTGCCAAGGA1489580.10252647315746422RNA PCR Primer, Index 1 (100% over 22bp)
CTCGGCTCGTGCGTCGATGAAGAACGCATGGAATTCTCGGGTGCCAAGGAA1468670.10108725636231217RNA PCR Primer, Index 1 (100% over 23bp)

[FAIL]Adapter Content

Adapter graph