FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001707674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25646901
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGC15374545.994696981128441No Hit
TATTGCACTCGTCCCGGCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCAG9697463.781142992675801RNA PCR Primer, Index 1 (100% over 29bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGCC6669262.600415543382805No Hit
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC6395152.493537133394791RNA PCR Primer, Index 1 (100% over 27bp)
CACCCGTAGAACCGACCTTGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG4812031.8762617752530804RNA PCR Primer, Index 1 (100% over 29bp)
TTCCCTTTGTCATCCTATGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAG4320941.6847805510693086RNA PCR Primer, Index 1 (100% over 29bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCCA4074291.588609087702253RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG3567111.3908542010592235RNA PCR Primer, Index 1 (100% over 29bp)
TTCCCTTTGTCATCCTATGCCTGTGGAATTCTCGGGTGCCAAGGAACTCCA3266751.2737406363443287RNA PCR Primer, Index 1 (100% over 28bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG3260391.2712608045705014RNA PCR Primer, Index 1 (100% over 29bp)
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCAG2498330.9741254898593791RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTTGTCCCGGCCTGTAATGGAATTCTCGGGTGCCAAGGAACTCC2428310.9468239457079044RNA PCR Primer, Index 1 (100% over 27bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCCA1960630.7644705299872293RNA PCR Primer, Index 1 (100% over 28bp)
CGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCAAGGAACT1862600.7262475883538522RNA PCR Primer, Index 1 (100% over 25bp)
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT1618820.6311951685702689RNA PCR Primer, Index 1 (100% over 30bp)
TATTGCACTTGTCCCGGCCTGTATTGGAATTCTCGGGTGCCAAGGAACTCC1616570.6303178695936792RNA PCR Primer, Index 1 (100% over 27bp)
TAGCTTATCAGACTGATGTTGACTTGGAATTCTCGGGTGCCAAGGAACTCC1469690.5730477924018968RNA PCR Primer, Index 1 (100% over 27bp)
TCCCTGAGACCCTTTAACCTGTGATGGAATTCTCGGGTGCCAAGGAACTCC1243010.4846628448403961RNA PCR Primer, Index 1 (100% over 27bp)
CGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC1174900.4581060300423821RNA PCR Primer, Index 1 (100% over 36bp)
TAGCTTATCAGACTGATGTTGACTGGAATTCTCGGGTGCCAAGGAACTCCA1140410.4446580115079011RNA PCR Primer, Index 1 (100% over 28bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAG1065100.4152938399847997RNA PCR Primer, Index 1 (100% over 29bp)
CACCCGTAGAACCGACCTTGCTGGAATTCTCGGGTGCCAAGGAACTCCAGT1058470.4127087323337818RNA PCR Primer, Index 1 (100% over 30bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC975440.3803344505443367RNA PCR Primer, Index 1 (100% over 31bp)
CGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGCCAAGGAACTC917900.35789899138301345RNA PCR Primer, Index 1 (100% over 26bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCAG855290.33348668519444125RNA PCR Primer, Index 1 (100% over 29bp)
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC827660.32271345376191846RNA PCR Primer, Index 1 (100% over 27bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGCC825070.32170358516219955No Hit
GCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCAAGGAAC813480.3171845206561214RNA PCR Primer, Index 1 (100% over 24bp)
GGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCC809240.3155312994735699No Hit
TGTAAACATCCTACACTCTCAGCTTGGAATTCTCGGGTGCCAAGGAACTCC786950.306840190945487RNA PCR Primer, Index 1 (100% over 27bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGGAATTCTCGGGTGCCAAGG753340.2937352937885166Illumina Small RNA Adapter 2 (100% over 21bp)
TCTTTGGTTATCTAGCTGTATGATGGAATTCTCGGGTGCCAAGGAACTCCA737880.287707275042704RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCTGGAATTCTCGGGTGCCAAGGAACTCCAGT725250.2827827034541132RNA PCR Primer, Index 1 (100% over 30bp)
TATTGCACTCGTCCCGGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC713570.2782285469889715RNA PCR Primer, Index 1 (100% over 31bp)
CATTGCACTTGTCTCGGTCTGATGGAATTCTCGGGTGCCAAGGAACTCCAG701660.2735847110728895RNA PCR Primer, Index 1 (100% over 29bp)
CCCCCCACTGCTAAATTTGACTGTGGAATTCTCGGGTGCCAAGGAACTCCA701520.2735301235810128RNA PCR Primer, Index 1 (100% over 28bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGATGGAATTCTCGGGTGCCA686170.267544995007389No Hit
CTCGGATCGGCCCCGCCGGGGTCTGGAATTCTCGGGTGCCAAGGAACTCCA685050.2671082950723754RNA PCR Primer, Index 1 (100% over 28bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCAG663820.2588304918399303RNA PCR Primer, Index 1 (100% over 29bp)
GCGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT656380.25592955655734RNA PCR Primer, Index 1 (100% over 35bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGGAATTCTCGGGTG629120.24530059206763424No Hit
CTAGACTGAAGCTCCTTGAGGATGGAATTCTCGGGTGCCAAGGAACTCCAG628080.2448950849851216RNA PCR Primer, Index 1 (100% over 29bp)
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGC620950.24211502200597257No Hit
TCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA593980.2315991316065828RNA PCR Primer, Index 1 (100% over 34bp)
GGAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTCC588120.2293142551608867RNA PCR Primer, Index 1 (100% over 27bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTGGAATTCTCGGGTGCCAA573070.22344609978414157No Hit
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTCC558940.2179366622111576RNA PCR Primer, Index 1 (100% over 27bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTCGTATGCC551750.21513320459263285RNA PCR Primer, Index 1 (100% over 51bp)
TGTAAACATCCTCGACTGGAAGCTGGAATTCTCGGGTGCCAAGGAACTCCA550680.21471600019043235RNA PCR Primer, Index 1 (100% over 28bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGTGGAATTCTCGGGTGCCA539530.21036849637310956No Hit
CCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCTGGAATTCTCGGGT511200.19932232748120327No Hit
TCAGTGCACTACAGAACTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG498630.19442115053198825RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTTGTCCCGGCCTGTATGGAATTCTCGGGTGCCAAGGAACTCCA496430.19356334708821157RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCATGGAATTCTCGGGTGCCAAGGAACTCCAG491910.19180095092190672RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTCGTCCCGGCCTCCATGGAATTCTCGGGTGCCAAGGAACTCCA482840.18826446126960916RNA PCR Primer, Index 1 (100% over 28bp)
CACTAGATTGTGAGCTCCTGGATGGAATTCTCGGGTGCCAAGGAACTCCAG462640.18038826601311403RNA PCR Primer, Index 1 (100% over 29bp)
CACCCGTAGAACCGACCTTGCGTTGGAATTCTCGGGTGCCAAGGAACTCCA461490.17993986875841256RNA PCR Primer, Index 1 (100% over 28bp)
CGCGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA458030.17859077788774558RNA PCR Primer, Index 1 (100% over 34bp)
TCAGTGCACTACAGAACTTTGTCTGGAATTCTCGGGTGCCAAGGAACTCCA451360.17599007381047713RNA PCR Primer, Index 1 (100% over 28bp)
CACCCGTAGAACCGACCTTGCGATGGAATTCTCGGGTGCCAAGGAACTCCA433270.16893659003869513RNA PCR Primer, Index 1 (100% over 28bp)
TCGAGGAGCTCACAGTCTAGTTGGAATTCTCGGGTGCCAAGGAACTCCAGT421360.1642927541226131RNA PCR Primer, Index 1 (100% over 30bp)
CAGCAGCACTCGCCGAATCCCGGGGCCGTGGAATTCTCGGGTGCCAAGGAA418720.16326338999008105RNA PCR Primer, Index 1 (100% over 23bp)
GGAATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCA413810.16134892866783399RNA PCR Primer, Index 1 (100% over 28bp)
GCGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGCCAAGGAACT411620.1604950243306199RNA PCR Primer, Index 1 (100% over 25bp)
CAGTGCAATAGTATTGTCAAAGCTGGAATTCTCGGGTGCCAAGGAACTCCA402050.15676357935019128RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCCTTGGAATTCTCGGGTGCCAAGGAACTCCA392000.15284497725475682RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTTTGGAATTCTCGGGTGCCAAGGAACTCCA390930.15242777285255632RNA PCR Primer, Index 1 (100% over 28bp)
CCCCCACTGCTAAATTTGACTGTGGAATTCTCGGGTGCCAAGGAACTCCAG379580.14800228690398112RNA PCR Primer, Index 1 (100% over 29bp)
TCCCTGAGACCCTTTAACCTGTGGTGGAATTCTCGGGTGCCAAGGAACTCC371810.14497268110482434RNA PCR Primer, Index 1 (100% over 27bp)
AGCAGCATTGTACAGGGCTATGATGGAATTCTCGGGTGCCAAGGAACTCCA367850.14342863490602625RNA PCR Primer, Index 1 (100% over 28bp)
CGCGCCGGCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA353870.13797768393148163RNA PCR Primer, Index 1 (100% over 37bp)
TCCCTGAGACCCTTTAACCTGTGTGGAATTCTCGGGTGCCAAGGAACTCCA348370.13583317532203987RNA PCR Primer, Index 1 (100% over 28bp)
CTGGACGAGGCGCCGCCGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC343610.13397720059823212RNA PCR Primer, Index 1 (100% over 31bp)
TCCCTGAGACCCTAACTTGTGATGGAATTCTCGGGTGCCAAGGAACTCCAG341960.1333338480153996RNA PCR Primer, Index 1 (100% over 29bp)
CAGTGCAATGATATTGTCAAAGCTGGAATTCTCGGGTGCCAAGGAACTCCA336080.13104117335657825RNA PCR Primer, Index 1 (100% over 28bp)
ATCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC335470.13080332785625834RNA PCR Primer, Index 1 (100% over 33bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC312690.12192116310660692RNA PCR Primer, Index 1 (100% over 36bp)
CGCGGCGGGGCGCGGGACATGTGGCGTACGGAAGTGGAATTCTCGGGTGCC311630.12150785781096907No Hit
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCA311140.12131680158940061RNA PCR Primer, Index 1 (100% over 37bp)
AACATTCAACGCTGTCGGTGAGTTTGGAATTCTCGGGTGCCAAGGAACTCC310800.12118423196627148RNA PCR Primer, Index 1 (100% over 27bp)
GTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCA306780.1196167911280977No Hit
TATTGCACTTGTCCCGGCCTGTTTTGGAATTCTCGGGTGCCAAGGAACTCC304520.11873559304494527RNA PCR Primer, Index 1 (100% over 27bp)
CTTTCAGTCGGATGTTTGCAGCTGGAATTCTCGGGTGCCAAGGAACTCCAG294070.11466102668700597RNA PCR Primer, Index 1 (100% over 29bp)
AACCCGTAGATCCGAACTTGTGTGGAATTCTCGGGTGCCAAGGAACTCCAG292000.11385391162854333RNA PCR Primer, Index 1 (100% over 29bp)
CCCGCGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGTGGAATTCTCGGGTG288340.11242683862662393No Hit
CAACGGAATCCCAAAAGCAGCTGTTGGAATTCTCGGGTGCCAAGGAACTCC280220.1092607640977754RNA PCR Primer, Index 1 (100% over 27bp)
CAAAGAATTCTCCTTTTGGGCTTTGGAATTCTCGGGTGCCAAGGAACTCCA278960.1087694766708851RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTAAATGGAATTCTCGGGTGCCAAGGAACTC266070.10374352831166621RNA PCR Primer, Index 1 (100% over 26bp)

[FAIL]Adapter Content

Adapter graph