FastQCFastQC Report
Wed 8 May 2024
EGAF00001707674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001707674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25646901
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTG15390256.000822477538319No Hit
TATTGCACTCGTCCCGGCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCA9719303.7896586414085665RNA PCR Primer, Index 1 (100% over 28bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGC6683262.605874292570475No Hit
TGTAAACATCCTCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC6408362.498687853164014RNA PCR Primer, Index 1 (100% over 26bp)
CACCCGTAGAACCGACCTTGCGTGGAATTCTCGGGTGCCAAGGAACTCCA4821581.8799854220203835RNA PCR Primer, Index 1 (100% over 28bp)
TTCCCTTTGTCATCCTATGCCTTGGAATTCTCGGGTGCCAAGGAACTCCA4330191.6883872246397333RNA PCR Primer, Index 1 (100% over 28bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCC4081271.5913306640829628RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCA3575291.3940436702274477RNA PCR Primer, Index 1 (100% over 28bp)
TTCCCTTTGTCATCCTATGCCTGTGGAATTCTCGGGTGCCAAGGAACTCC3272561.2760060172572116RNA PCR Primer, Index 1 (100% over 27bp)
AAGCTGCCAGTTGAAGAACTGTTGGAATTCTCGGGTGCCAAGGAACTCCA3266791.2737562327705791RNA PCR Primer, Index 1 (100% over 28bp)
TTCAAGTAATCCAGGATAGGCTTGGAATTCTCGGGTGCCAAGGAACTCCA2503690.9762154109769442RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTAATGGAATTCTCGGGTGCCAAGGAACTC2433920.949011344489535RNA PCR Primer, Index 1 (100% over 26bp)
AACATTCAACGCTGTCGGTGAGTTGGAATTCTCGGGTGCCAAGGAACTCC1964380.7659326949482123RNA PCR Primer, Index 1 (100% over 27bp)
CGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCAAGGAAC1865770.7274836051342031RNA PCR Primer, Index 1 (100% over 24bp)
TTCACAGTGGCTAAGTTCTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG1620650.6319087050712286RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTTGTCCCGGCCTGTATTGGAATTCTCGGGTGCCAAGGAACTC1619860.6316006756527816RNA PCR Primer, Index 1 (100% over 26bp)
TAGCTTATCAGACTGATGTTGACTTGGAATTCTCGGGTGCCAAGGAACTC1472960.574322800247874RNA PCR Primer, Index 1 (100% over 26bp)
TCCCTGAGACCCTTTAACCTGTGATGGAATTCTCGGGTGCCAAGGAACTC1245390.48559083220230004RNA PCR Primer, Index 1 (100% over 26bp)
CGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT1175970.4585232344445826RNA PCR Primer, Index 1 (100% over 35bp)
TAGCTTATCAGACTGATGTTGACTGGAATTCTCGGGTGCCAAGGAACTCC1142440.44544953014011324RNA PCR Primer, Index 1 (100% over 27bp)
TAGCAGCACGTAAATATTGGCGTGGAATTCTCGGGTGCCAAGGAACTCCA1067530.4162413228795167RNA PCR Primer, Index 1 (100% over 28bp)
CACCCGTAGAACCGACCTTGCTGGAATTCTCGGGTGCCAAGGAACTCCAG1060010.41330919474442546RNA PCR Primer, Index 1 (100% over 29bp)
TTCACAGTGGCTAAGTTCTGTGGAATTCTCGGGTGCCAAGGAACTCCAGT976770.38085303171716534RNA PCR Primer, Index 1 (100% over 30bp)
CGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGCCAAGGAACT919010.35833179221146444RNA PCR Primer, Index 1 (100% over 25bp)
TAGCTTATCAGACTGATGTTGATGGAATTCTCGGGTGCCAAGGAACTCCA857000.33415343241664947RNA PCR Primer, Index 1 (100% over 28bp)
TGTAAACATCCTTGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC829590.3234659813285044RNA PCR Primer, Index 1 (100% over 26bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGC826840.3223937270237835No Hit
GCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCCAAGGAA816020.3181748937230272RNA PCR Primer, Index 1 (100% over 23bp)
GGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGC810950.31619804669577817No Hit
TGTAAACATCCTACACTCTCAGCTTGGAATTCTCGGGTGCCAAGGAACTC788370.3073938640773792RNA PCR Primer, Index 1 (100% over 26bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGGAATTCTCGGGTGCCAAG756010.2947763552407365No Hit
TCTTTGGTTATCTAGCTGTATGATGGAATTCTCGGGTGCCAAGGAACTCC739330.28827264549428405RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTCGTCCCGGCCTCTGGAATTCTCGGGTGCCAAGGAACTCCAG726310.2831960087497511RNA PCR Primer, Index 1 (100% over 29bp)
TATTGCACTCGTCCCGGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT714910.27875102726836276RNA PCR Primer, Index 1 (100% over 30bp)
CATTGCACTTGTCTCGGTCTGATGGAATTCTCGGGTGCCAAGGAACTCCA702990.2741032922457181RNA PCR Primer, Index 1 (100% over 28bp)
CCCCCCACTGCTAAATTTGACTGTGGAATTCTCGGGTGCCAAGGAACTCC702680.27398241994227684RNA PCR Primer, Index 1 (100% over 27bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGATGGAATTCTCGGGTGCC687130.26791930923740065No Hit
CTCGGATCGGCCCCGCCGGGGTCTGGAATTCTCGGGTGCCAAGGAACTCC686360.2676190780320788RNA PCR Primer, Index 1 (100% over 27bp)
AACATTCAACGCTGTCGGTGAGTGGAATTCTCGGGTGCCAAGGAACTCCA665180.2593607703324468RNA PCR Primer, Index 1 (100% over 28bp)
GCGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA656900.25613231009859627RNA PCR Primer, Index 1 (100% over 34bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTGGAATTCTCGGGT629930.24561641969920653No Hit
CTAGACTGAAGCTCCTTGAGGATGGAATTCTCGGGTGCCAAGGAACTCCA629210.24533568402669784RNA PCR Primer, Index 1 (100% over 28bp)
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTG621640.24238406035879345No Hit
TCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC594420.23177069229533814RNA PCR Primer, Index 1 (100% over 33bp)
GGAATACCGGGTGCTGTAGGCTTTTGGAATTCTCGGGTGCCAAGGAACTC589340.2297899461615265RNA PCR Primer, Index 1 (100% over 26bp)
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTTGGAATTCTCGGGTGCCA575200.2242766094819799No Hit
TGTAAACATCCCCGACTGGAAGCTTGGAATTCTCGGGTGCCAAGGAACTC560100.21838895857242166RNA PCR Primer, Index 1 (100% over 26bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATCACGATCTCGTATGC552760.21552701435545762RNA PCR Primer, Index 1 (100% over 50bp)
TGTAAACATCCTCGACTGGAAGCTGGAATTCTCGGGTGCCAAGGAACTCC551770.2151410028057581RNA PCR Primer, Index 1 (100% over 27bp)
CGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGTGGAATTCTCGGGTGCC540110.2105946445537416No Hit
CCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCTGGAATTCTCGGG512570.1998565050802824No Hit
TCAGTGCACTACAGAACTTTGTTGGAATTCTCGGGTGCCAAGGAACTCCA499430.19473307905699797RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTTGTCCCGGCCTGTATGGAATTCTCGGGTGCCAAGGAACTCC497630.19403123987572612RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTCGTCCCGGCCTCATGGAATTCTCGGGTGCCAAGGAACTCCA493050.19224544907004554RNA PCR Primer, Index 1 (100% over 28bp)
TATTGCACTCGTCCCGGCCTCCATGGAATTCTCGGGTGCCAAGGAACTCC483820.18864657371274604RNA PCR Primer, Index 1 (100% over 27bp)
CACTAGATTGTGAGCTCCTGGATGGAATTCTCGGGTGCCAAGGAACTCCA463420.18069239632499848RNA PCR Primer, Index 1 (100% over 28bp)
CACCCGTAGAACCGACCTTGCGTTGGAATTCTCGGGTGCCAAGGAACTCC462330.18026739370967276RNA PCR Primer, Index 1 (100% over 27bp)
CGCGCGCCGGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC458310.17869995287149898RNA PCR Primer, Index 1 (100% over 33bp)
TCAGTGCACTACAGAACTTTGTCTGGAATTCTCGGGTGCCAAGGAACTCC452190.1763136996551747RNA PCR Primer, Index 1 (100% over 27bp)
CACCCGTAGAACCGACCTTGCGATGGAATTCTCGGGTGCCAAGGAACTCC433900.16918223375214028RNA PCR Primer, Index 1 (100% over 27bp)
TCGAGGAGCTCACAGTCTAGTTGGAATTCTCGGGTGCCAAGGAACTCCAG421910.16450720498355728RNA PCR Primer, Index 1 (100% over 29bp)
CAGCAGCACTCGCCGAATCCCGGGGCCGTGGAATTCTCGGGTGCCAAGGA420240.16385605418759952RNA PCR Primer, Index 1 (100% over 22bp)
GGAATACCGGGTGCTGTAGGCTTTGGAATTCTCGGGTGCCAAGGAACTCC414560.1616413616600306RNA PCR Primer, Index 1 (100% over 27bp)
GCGGCGTCCGGTGAGCTCTCGCTGGCTGGAATTCTCGGGTGCCAAGGAAC412520.16084594392125584RNA PCR Primer, Index 1 (100% over 24bp)
CAGTGCAATAGTATTGTCAAAGCTGGAATTCTCGGGTGCCAAGGAACTCC402640.15699362663738595RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTCGTCCCGGCCTCCTTGGAATTCTCGGGTGCCAAGGAACTCC392950.15321539237820586RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTTGTCCCGGCCTGTTTGGAATTCTCGGGTGCCAAGGAACTCC391830.15277869244319225RNA PCR Primer, Index 1 (100% over 27bp)
CCCCCACTGCTAAATTTGACTGTGGAATTCTCGGGTGCCAAGGAACTCCA380390.14831811453555344RNA PCR Primer, Index 1 (100% over 28bp)
TCCCTGAGACCCTTTAACCTGTGGTGGAATTCTCGGGTGCCAAGGAACTC372640.1452963069495219RNA PCR Primer, Index 1 (100% over 26bp)
AGCAGCATTGTACAGGGCTATGATGGAATTCTCGGGTGCCAAGGAACTCC368520.1436898750457219RNA PCR Primer, Index 1 (100% over 27bp)
CGCGCCGGCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC355350.13855475170274958RNA PCR Primer, Index 1 (100% over 36bp)
TCCCTGAGACCCTTTAACCTGTGTGGAATTCTCGGGTGCCAAGGAACTCC349040.1360944154617355RNA PCR Primer, Index 1 (100% over 27bp)
CTGGACGAGGCGCCGCCGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGT344130.13417995413948844RNA PCR Primer, Index 1 (100% over 30bp)
TCCCTGAGACCCTAACTTGTGATGGAATTCTCGGGTGCCAAGGAACTCCA342800.13366137296665978RNA PCR Primer, Index 1 (100% over 28bp)
CAGTGCAATGATATTGTCAAAGCTGGAATTCTCGGGTGCCAAGGAACTCC336600.13124392689783457RNA PCR Primer, Index 1 (100% over 27bp)
ATCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA335700.13089300730719863RNA PCR Primer, Index 1 (100% over 32bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT313070.12206932915598653RNA PCR Primer, Index 1 (100% over 35bp)
CGCGGCGGGGCGCGGGACATGTGGCGTACGGAAGTGGAATTCTCGGGTGC312320.12177689616378992No Hit
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATC312090.12168721671284963RNA PCR Primer, Index 1 (100% over 36bp)
AACATTCAACGCTGTCGGTGAGTTTGGAATTCTCGGGTGCCAAGGAACTC311430.12142987567971664RNA PCR Primer, Index 1 (100% over 26bp)
GTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCTGGAATTCTCGGGTGCC307270.11980784734966614No Hit
TATTGCACTTGTCCCGGCCTGTTTTGGAATTCTCGGGTGCCAAGGAACTC305240.11901632871745402RNA PCR Primer, Index 1 (100% over 26bp)
CTTTCAGTCGGATGTTTGCAGCTGGAATTCTCGGGTGCCAAGGAACTCCA294580.11485988112169966RNA PCR Primer, Index 1 (100% over 28bp)
AACCCGTAGATCCGAACTTGTGTGGAATTCTCGGGTGCCAAGGAACTCCA292560.11407226159605013RNA PCR Primer, Index 1 (100% over 28bp)
CCCGCGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGTGGAATTCTCGGGT288740.1125828028891288No Hit
CAACGGAATCCCAAAAGCAGCTGTTGGAATTCTCGGGTGCCAAGGAACTC280750.10946741674559433RNA PCR Primer, Index 1 (100% over 26bp)
CAAAGAATTCTCCTTTTGGGCTTTGGAATTCTCGGGTGCCAAGGAACTCC279380.1089332391465152RNA PCR Primer, Index 1 (100% over 27bp)
TATTGCACTTGTCCCGGCCTGTAAATGGAATTCTCGGGTGCCAAGGAACT266400.10387219882823269RNA PCR Primer, Index 1 (100% over 25bp)

[FAIL]Adapter Content

Adapter graph