FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001720370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31243851
Sequences flagged as poor quality0
Sequence length125
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3369431.07842980047498No Hit
CCGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1658900.5309524744564939No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1276700.408624404206767No Hit
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1110150.3553179151955372No Hit
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC643610.20599573336846344No Hit
CCGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC403580.12917101672261846No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)