FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001720378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29819493
Sequences flagged as poor quality0
Sequence length125
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3143621.0542164482809953No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2076210.6962593227188671No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1191580.39959767256941625TruSeq Adapter, Index 13 (97% over 37bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC869370.29154419225035116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)