FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001720382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27224552
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1337370.49123673366599385No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG856000.3144220701960495TruSeq Adapter, Index 19 (97% over 37bp)
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA831100.3052759141821691No Hit
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC466090.17120208259074382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)