FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001720383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27224552
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1321160.4852825493694074No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC846040.31076360779049733Illumina Single End PCR Primer 1 (96% over 33bp)
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA816830.30003432196055974No Hit
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC463210.17014421394335524No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)