FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001720388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23596110
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1961120.8311200447870433No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1232730.5224293326315227No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG641270.2717693721549866TruSeq Adapter, Index 3 (97% over 35bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC501690.21261555400445242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)