FastQCFastQC Report
Fri 10 Mar 2023
EGAF00001720400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68841145
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT4161660.6045309095309208No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2514630.36528009521050236No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCAGAAATCTCGTATG1703930.24751622013259658TruSeq Adapter, Index 13 (97% over 37bp)
CCTGCCCCTGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1025370.14894726111833265No Hit
CCTGCCCCTGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC805680.1170346600132813No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)