FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001720401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68841145
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCCCTGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3747720.5444011717120626No Hit
CCTGCCCCTGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2292550.33302031800894655No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC1145620.16641501241735593Illumina Single End PCR Primer 1 (96% over 33bp)
CCTGCCCCTGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC861460.12513737242458706No Hit
CCTGCCCCTGTGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC764150.1110019306041467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)