FastQCFastQC Report
Sun 14 May 2023
EGAF00001720411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29024554
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATCTC4778291.6462923082297836Illumina Single End PCR Primer 1 (96% over 31bp)
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCCCTATGTGTAGATCTC668700.23039113710412226Illumina Single End PCR Primer 1 (96% over 31bp)
TAGAGCCCGCCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT397320.13689099236460275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)