FastQCFastQC Report
Tue 8 Aug 2023
EGAF00001720416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40556421
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAGTCATGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2403070.5925251638945163No Hit
TAAAGTCATGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1596080.39354557444800164No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCTGAAGCTATCTCGTATG719290.17735539336668785TruSeq Adapter, Index 19 (97% over 37bp)
TAAAGTCATGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC480250.11841528126951832No Hit
TAAAGTCATGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC424990.10478981860850098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)