FastQCFastQC Report
Thu 9 Feb 2023
EGAF00001720423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81436183
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTCAGAAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT4101760.5036778307745589No Hit
AGAACTCAGAATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA2656270.3261781068496297No Hit
AGAACTCAGAAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC1525590.18733564661300495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)