FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001720440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23698304
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTATG4172431.7606449811767122TruSeq Adapter, Index 7 (97% over 37bp)
AGCCATATGAGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1588580.6703348897878937No Hit
AGCCATATGAGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA896640.3783561895399772No Hit
AGCCATATGAGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC569940.24049822299519832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)