FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001720445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38449816
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTTTGATTAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2139870.5565358232143426No Hit
GTCTTTGATTATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1519960.39531008418869934No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC1219460.3171562641548142Illumina Single End PCR Primer 1 (96% over 33bp)
GTCTTTGATTAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC718910.18697358655760538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)