FastQCFastQC Report
Thu 16 Mar 2023
EGAF00001720464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59128948
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCAGCGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT3109350.5258591781473941No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG2064560.34916230878993487TruSeq Adapter, Index 2 (97% over 36bp)
TGCATCAGCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1343970.22729475924381407No Hit
TGCATCAGCGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC1024330.17323663529410332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)