FastQCFastQC Report
Wed 6 Sep 2023
EGAF00001720470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46094107
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2731820.5926614436851982No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTATG2252070.4885808938656736TruSeq Adapter, Index 2 (97% over 36bp)
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1949420.4229217413844247No Hit
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC557500.12094821578819176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)