FastQCFastQC Report
Mon 3 Apr 2023
EGAF00001720471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46094107
Sequences flagged as poor quality0
Sequence length125
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTAAGAATCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT2500980.5425812891873575No Hit
TGTAAGAATCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1913620.4151550218773085No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC1236430.26824036313362143Illumina Single End PCR Primer 1 (96% over 33bp)
TGTAAGAATCAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC535490.11617320192362117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)