FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001720473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001720473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39269116
Sequences flagged as poor quality0
Sequence length125
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAGTCGATATGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT1845040.46984505584490366No Hit
GTAGTCGATATTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA1258050.3203662644201107No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC762120.19407617935682586Illumina Single End PCR Primer 1 (96% over 33bp)
GTAGTCGATATGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC610630.1554987894303503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)