FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18805911
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTT14713637.823938973230278Clontech SMART CDS Primer II A (100% over 26bp)
TATATATATATATATATATATATATATATATATATATATATAT4781432.542514425384657No Hit
ATATATATATATATATATATATATATATATATATATATATATA3440351.8293982142104153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG391220.20803033684462297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)