FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18229109
Sequences flagged as poor quality0
Sequence length42
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTT11556406.339530911796073Clontech SMART CDS Primer II A (100% over 26bp)
ATATATATATATATATATATATATATATATATATATATATAT3088061.6940268446472069No Hit
TATATATATATATATATATATATATATATATATATATATATA2614881.4344529949324458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)