FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22483722
Sequences flagged as poor quality0
Sequence length43
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTT18339158.156634386424098Clontech SMART CDS Primer II A (100% over 26bp)
TATATATATATATATATATATATATATATATATATATATATAT16363627.277985379822789No Hit
ATATATATATATATATATATATATATATATATATATATATATA13741586.111790565636775No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG617580.2746787208986128No Hit
TATATATATATATATATATATATATATATATATATATATATAA493850.21964779674824303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)