FastQCFastQC Report
Tue 13 Sep 2022
EGAF00001721598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42266464
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTCAATCT1634310.38666825784148867TruSeq Adapter, Index 15 (97% over 43bp)
TATATATATATATATATATATATATATATATATATATATATAT523870.12394460061764334No Hit
ATATATATATATATATATATATATATATATATATATATATATA456010.1078893185860071No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)