FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26214599
Sequences flagged as poor quality0
Sequence length42
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGTAA2065430.7878930362428966TruSeq Adapter, Index 9 (97% over 37bp)
ATATATATATATATATATATATATATATATATATATATATAT380060.1449802836961191No Hit
TATATATATATATATATATATATATATATATATATATATATA333660.12728022274916356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)