FastQCFastQC Report
Mon 5 Sep 2022
EGAF00001721620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23135770
Sequences flagged as poor quality0
Sequence length43
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATATATATATATATATATATATATATATATATATATAT10590744.5776475129204695No Hit
ATATATATATATATATATATATATATATATATATATATATATA7656153.309226362468161No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCT1082280.4677951068842749TruSeq Adapter, Index 12 (100% over 43bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)