FastQCFastQC Report
Mon 6 Mar 2023
EGAF00001721623

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721623
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119607090
Sequences flagged as poor quality0
Sequence length30-101
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGA9325670.7796920734381214No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGC6583330.5504130231744623No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAA6478170.5416209022391566No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAA6266370.5239129218844802No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACGA5848640.48898773475719537No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGA3293760.2753816684278499No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGC2938880.2457111865191269No Hit
AATTTATTACATTCCATTCCATTCCATTCCATTCCATTCTATTACATTCC2351720.1966204511789393No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAA2299880.19228625995331883No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGT1996930.16695749390776082No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGA1829480.15295748772083662No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAC1678200.140309408079404No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTCCA1272230.1063674402579312No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAT1220450.10203826545734035No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)