FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001721624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58195310
Sequences flagged as poor quality0
Sequence length30-101
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAATAGAATGGAATGGAATGGAATGGAACGGAATGGAATGGAATGGAA2818040.48423833466992444No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT2225380.3823985128698515No Hit
CGGTACGAGATCGATAGTTAATAAGTATCGTAAGGGAAAGTTGAAAAGAA2009210.34525290783741847No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA1801290.309524942817557No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTGTTAGTT1715440.2947728949291618No Hit
CGGAATTGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAATGGAA1253990.2154795635593315No Hit
TGGTATGAGATTGATAGTTAATAAGTATTGTAAGGGAAAGTTGAAAAGAA1201390.20644103450948195No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAAT1151560.1978784888335503No Hit
CGGGTAGAGGTTGTAATTTCGGTATTTTGGGAGGTTAAGGTAGGCGGTTG1055480.1813685673295666No Hit
CGGAACGGAATGGAATGGAATGGAATGGAATTAATTCGATTGTAATGGAA1000120.17185577325732948No Hit
CGGAATAGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA828420.14235167748053926No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATA769530.13223230531807462No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGT740990.12732813005034255No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATTTTGTTAGTT709640.12194109800257098No Hit
CGGGGTCGGTTTACGGTTTTGGCGGAGCGTTGAGAAGACGGTCGAATTTG642390.11038518396070061No Hit
CGGAATAGAATGGAATGTAATGGAATGGAACGGAATGGAATGGAATGGAA633660.10888506307467045No Hit
CGGTTTTAATAGTTTATGTTGAAGTCGAGGAGTTTATCGGGGAAATAGGA605650.10407196043804903No Hit
CGGCGGTTTAGGTTTGTCGTTTTTAGTATTTTGGGAGGTTTAGGAAGGTG603060.10362690739167814No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAA594710.10219208386380277No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAT582070.10002008752939026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)