FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001721625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58195310
Sequences flagged as poor quality0
Sequence length30-101
%GC37

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGA5382410.9248872460684546No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGC3185580.5473946268178655No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACGA2680000.4605182101444258No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGT2261710.38864128397975717No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAA1889710.3247186070492622No Hit
AACGAACTACGCGAACCCCACCCGTTTACCTCTTAACGATTTCACGCCCT1401560.24083727709329153No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAA1230990.2115273550394353No Hit
AACAAACTACACAAACCCCACCCATTTACCTCTTAACAATTTCACACCCT1147940.1972564455795493No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGA1120400.19252410546485618No Hit
AACTCCGTTAATAATCCTTCCGCAAATTCACCTACGAAAACCTTATTACG969270.16655465878607745No Hit
AAATCACCACCAAACTCACCAATTTCACTCAATTACTCTCCAATCTCTCT935950.16082911148681914No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGC935190.1606985167705095No Hit
AACGCACGCCTAAACATCACTATCCGTCTCGTCGTCGCCCCCTACGACCT917110.15759173720356504No Hit
ACCTCGACCTCCCGAAATCATACACCGAATAAAAAAACCCAACAAAACCC892310.1533302254081987No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAT889140.15278550797306517No Hit
AATTTATTACATTCCATTCCATTCCATTCCATTCCATTCTATTACATTCC839460.1442487375700894No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGA821650.14118835349446543No Hit
AAATTACAAACGAAATCTCGTTCACTCAATACTCAATAATACCCAAACTA705400.12121251695368579No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAC700570.12038255316450758No Hit
AAATTACGAACATACGCTACCACGTCTAACTAATTTCGTATTTTTAATAA661410.11365348857150172No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCAC658750.11319640706441807No Hit
ACAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATT655570.11264997127775417No Hit
AATCCCCGCTTAAATACGAAAAACATTTTCAAACTTTTCTCTCGATCACG591360.10161643610112224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)