FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001721627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001721627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56810643
Sequences flagged as poor quality0
Sequence length30-101
%GC36

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAA5834781.0270575532827537No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAT2885710.5079523567441404No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGC2583720.4547950636643912No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGA2394580.4215020062349937No Hit
AACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACGA2010620.35391607871785574No Hit
AATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAA1594530.28067452079357735No Hit
AATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAA1439070.25330992997210044No Hit
AAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCAC1273710.22420270793273717No Hit
AACGAACTACGCGAACCCCACCCGTTTACCTCTTAACGATTTCACGCCCT1167500.20550726736185682No Hit
AATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGT1088780.19165070882932975No Hit
AAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAC789320.138938754838596No Hit
AACGCACGCCTAAACATCACTATCCGTCTCGTCGTCGCCCCCTACGACCT738760.13003901399250137No Hit
ACAACCATCCGATTTCTCAATTTTTTCCCCACCCTTCCCGCCTTTCTATT703160.12377258254232398No Hit
ATTAATTCCATTCCATTCCATTCCATTCCATTCCCTTCCATTCCATTCCA623260.10970831645049327No Hit
AATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGC580090.10210938820037647No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)